PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OBART01G34800.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 297aa    MW: 32764 Da    PI: 10.2297
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OBART01G34800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.22.7e-1077134155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s ykGV +++ +g+++A+++d   +n    rkr + g ++t+e Aa+ ++ a++k++g
  OBART01G34800.1  77 SIYKGVARHRGSGKYEAHLWDkQGWNPnqTRKRGRQGAYDTEEAAARTYDLAALKIWG 134
                      57*******************555533445599999*******************987 PP

2AP251.32.9e-16177228155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV  ++ +grW+A+I   +   g +k+ +lg+f+t eeAa a++ a+ +l+g
  OBART01G34800.1 177 SKYRGVAKHHHNGRWEARIGRaV---G-KKYLYLGTFDTQEEAATAYDLAAIQLRG 228
                      89****************99966...2.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.58E-1777144No hitNo description
PfamPF008471.2E-777134IPR001471AP2/ERF domain
SuperFamilySSF541716.41E-1477144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-1378142IPR001471AP2/ERF domain
PROSITE profilePS5103218.41378142IPR001471AP2/ERF domain
SMARTSM003802.4E-1778148IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-18177238IPR016177DNA-binding domain
PfamPF008471.3E-11177228IPR001471AP2/ERF domain
CDDcd000183.68E-24177238No hitNo description
Gene3DG3DSA:3.30.730.109.7E-20178237IPR001471AP2/ERF domain
SMARTSM003801.9E-27178242IPR001471AP2/ERF domain
PROSITE profilePS5103218.584178236IPR001471AP2/ERF domain
PRINTSPR003673.0E-5179190IPR001471AP2/ERF domain
PRINTSPR003673.0E-5218238IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVSMRKKKKA FAVAAATTLL SPPRSSSSSS STASSCIVPP RTESGKKKSK HRKRAKDGTG  60
GDDDAAAVAA APRKGSSIYK GVARHRGSGK YEAHLWDKQG WNPNQTRKRG RQGAYDTEEA  120
AARTYDLAAL KIWGSDHVLN FPIDTYRKEL ERMQRMTREE YLATLRRKSS GFSRGVSKYR  180
GVAKHHHNGR WEARIGRAVG KKYLYLGTFD TQEEAATAYD LAAIQLRGRS AVTNFDASCY  240
TYTDHLPPPP PPPPQPPSVC KTEPELEPPQ PAAPPGSESL LRPKMEPCDD WEPPAIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6851210.0AY685121.1 Oryza sativa (japonica cultivar-group) transcription factor AP2D10 (AP2D10) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646190.11e-115PREDICTED: ethylene-responsive transcription factor WRI1-like
SwissprotQ6X5Y62e-79WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA0A0D3EVD20.0A0A0D3EVD2_9ORYZ; Uncharacterized protein
STRINGBGIOSGA004677-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134012730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-77AP2 family protein